Matrix Family Library Version 11.1

[New weight matrices]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 11.1 (February 2019) contains 2071 weight matrices in 500 families classified into the following groups:

Fungi (157 matrices in 68 families)
Insects (92 matrices in 52 families)
Plants (627 matrices in 122 families)
Vertebrates (1157 matrices in 230 families)
Miscellaneous (21 matrices in 17 families)
General Core Promoter Elements (17 matrices in 11 families)

The vertebrate group represents binding site descriptions of 10473 transcription factors:

Homo sapiens: 867
Mus musculus: 834
Rattus norvegicus: 808
Pan troglodytes: 801
Bos taurus: 785
Macaca mulatta: 754
Canis familiaris: 753
Sus scrofa: 655
Equus caballus: 651
Gallus gallus: 644
Xenopus tropicalis: 637
Danio rerio: 631
Oryctolagus cuniculus: 545
Monodelphis domestica: 504
Taeniopygia guttata: 449
Ornithorhynchus anatinus: 29

The plant group represents binding site descriptions of 1202 transcription factors from several plant species.

The fungi group represents binding site descriptions of 140 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.

New weight matrices

Vertebrates

Family	Family Information	Matrix Name	Matrix Information
V$BCDF	Bicoid-like homeodomain transcription factors	V$OTX2.03	Orthodenticle homeobox 2
V$CREB	cAMP-responsive element binding proteins	V$ATF7.01	Activating transcription factor 7
V$CTIP	COUP-TF-interacting proteins	V$BCL11A.01	B-cell CLL/lymphoma 11A (COUP-TF-interacting protein 1, CTIP1)
V$GCNR	Germ cell nuclear receptors	V$RTR.02	Retinoid receptor-related testis-associated receptor (GCNF/RTR), DR0 sites
V$HEAT	Heat shock factors	V$HSF5.01	Heat shock transcription factor 5
V$HMGB	HMG-box factors	V$BBX.01	Bobby sox homolog, HMG-box containing 2
V$LHXF	Lim homeodomain factors	V$LHX6.02	LIM homeobox 6
V$MAZF	Myc associated zinc fingers	V$MAZ.02	Myc associated zinc finger protein (MAZ)
V$MAZF	Myc associated zinc fingers	V$MAZ.03	Myc associated zinc finger protein (MAZ)
V$PIT1	GHF-1 pituitary specific pou domain transcription factor	V$PIT1.03	GHF-1 pituitary specific pou domain transcription factor
V$PIT1	GHF-1 pituitary specific pou domain transcription factor	V$PIT1.04	GHF-1 pituitary specific pou domain transcription factor
V$PLZF	C2H2 zinc finger protein PLZF	V$ZBTB32.01	Zinc finger and BTB domain containing 32, PLZF-related testicular zinc-finger protein
V$PRDM	PR (PRDI-BF1-RIZ1 homologous) domain transcription factor	V$PRDM4.02	PR/SET domain 4
V$PTF1	Pancreas transcription factor 1, heterotrimeric transcription factor	V$PTF1.02	Binding sites are bipartite with an E-box and a TC-box (RBP-J/L) spaced one helical turn apart
V$PTF1		V$PTF1.03	Binding sites are bipartite with an E-box and a TC-box (RBP-J/L) spaced two helical turns apart
V$SAL4	Spalt-like transcription factor 4	V$SALL4.01	Spalt like 4, DRRS, HSAL4, ZNF797
V$SFZF	Snail family zinc finger transcription factors	V$SNAIL.01	Snail family of transcription factors
V$SNAI	Snail family of zinc finger transcription factors binding to E-box motifs	V$SNAI2.01	Snail family transcriptional repressor 2
V$SNAI		V$SNAI3.01	Snail family transcriptional repressor 3
V$STAF	Selenocysteine tRNA activating factor	V$THAP11.01	THAP domain containing 11 (Ronin)
V$ZADT	Zinc finger, AD-type	V$ZNF276.01	Zinc finger protein 276, CENPZ (centromere protein Z)
V$ZF07	C2H2 zinc finger transcription factors 7	V$ZNF444.01	Zinc finger protein 444, endothelial zinc finger protein 2, ZSCAN17
V$ZF18	C2H2 zinc finger transcription factors 18	V$ZNF750.01	Zinc finger protein 750
V$ZF19	C2H2 zinc finger transcription factors 19	V$ZNF345.01	Zinc finger protein 345 (HZF10)
V$ZF20	C2H2 zinc finger transcription factors 20	V$ZNF771.01	Zinc finger protein 771, mesenchymal stem cell protein DSC43
V$ZF21	C2H2 zinc finger transcription factors 21	V$ZNF660.01	Zinc finger protein 660
V$ZF22	C2H2 zinc finger transcription factors 22	V$ZNF704.01	Zinc finger protein 704
V$ZF23	C2H2 zinc finger transcription factors 23	V$ZSCAN23.01	Zinc finger and SCAN domain containing 23
V$ZF24	C2H2 zinc finger transcription factors 24	V$ZNF24.01	Zinc finger protein 24 (KOX17, ZNF191, ZFP24))
V$ZF24	C2H2 zinc finger transcription factors 24	V$ZNF24.02	Zinc finger protein 24 (KOX17, ZNF191, ZFP24))
V$ZF25	C2H2 zinc finger transcription factors 25	V$ZSCAN9.01	Zinc finger and SCAN domain containing 9
V$ZF26	C2H2 zinc finger transcription factors 26	V$ZNF396.01	Zinc finger protein 396, ZSCAN14
V$ZF27	C2H2 zinc finger transcription factors 27	V$ZNF140.01	Zinc finger protein 140, pHZ-39
V$ZF41	C2H2 zinc finger transcription factors 41	V$ZFP41.01	ZFP41 zinc finger protein (ZNF753)
V$ZICF	Members of ZIC-family, zinc finger protein of the cerebellum	V$ZIC1.02	Zic family member 1, Zinc finger protein of the cerebellum 1
V$ZICF		V$ZIC5.01	Zic family member 5

Plants

Family	Family Information	Matrix Name	Matrix Information
P$GRSF	Germline-restrictive silencing factor	P$GRSF.01	Germline-restrictive silencing factor
P$MGSA	Male gamete selective activation motifs	P$MGSA.01	Male gamete selective activation motif
P$TODS	Time-of-day-specific cis regulatory elements	P$PRR5.01	Pseudo-response regulator 5
		P$PRR7.01	Pseudo-response regulator 7
		P$PRR9.01	Pseudo-response regulator 9
		P$TOC1.01	Timing of CAB expression 1, CCT motif-containing response regulator protein (PRR1)