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Matrix Family Library Version 11.1

[New weight matrices]
[Changes in previous release] [View all matrices]

Matrix Family Library Version 11.1 (February 2019) contains 2071 weight matrices in 500 families classified into the following groups:

The vertebrate group represents binding site descriptions of 10473 transcription factors: The plant group represents binding site descriptions of 1202 transcription factors from several plant species.

The fungi group represents binding site descriptions of 140 transcription factors from Saccharomyces cerevisiae and Schizosaccharomyces pombe.


New weight matrices

Vertebrates

Family Family Information Matrix Name Matrix Information
V$BCDF Bicoid-like homeodomain transcription factors V$OTX2.03 Orthodenticle homeobox 2
V$CREB cAMP-responsive element binding proteins V$ATF7.01 Activating transcription factor 7
V$CTIP COUP-TF-interacting proteins V$BCL11A.01 B-cell CLL/lymphoma 11A (COUP-TF-interacting protein 1, CTIP1)
V$GCNR Germ cell nuclear receptors V$RTR.02 Retinoid receptor-related testis-associated receptor (GCNF/RTR), DR0 sites
V$HEAT Heat shock factors V$HSF5.01 Heat shock transcription factor 5
V$HMGB HMG-box factors V$BBX.01 Bobby sox homolog, HMG-box containing 2
V$LHXF Lim homeodomain factors V$LHX6.02 LIM homeobox 6
V$MAZF Myc associated zinc fingers V$MAZ.02 Myc associated zinc finger protein (MAZ)
V$MAZ.03 Myc associated zinc finger protein (MAZ)
V$PIT1 GHF-1 pituitary specific pou domain transcription factor V$PIT1.03 GHF-1 pituitary specific pou domain transcription factor
V$PIT1.04 GHF-1 pituitary specific pou domain transcription factor
V$PLZF C2H2 zinc finger protein PLZF V$ZBTB32.01 Zinc finger and BTB domain containing 32, PLZF-related testicular zinc-finger protein
V$PRDM PR (PRDI-BF1-RIZ1 homologous) domain transcription factor V$PRDM4.02 PR/SET domain 4
V$PTF1 Pancreas transcription factor 1, heterotrimeric transcription factor V$PTF1.02 Binding sites are bipartite with an E-box and a TC-box (RBP-J/L) spaced one helical turn apart
V$PTF1.03 Binding sites are bipartite with an E-box and a TC-box (RBP-J/L) spaced two helical turns apart
V$SAL4 Spalt-like transcription factor 4 V$SALL4.01 Spalt like 4, DRRS, HSAL4, ZNF797
V$SFZF Snail family zinc finger transcription factors V$SNAIL.01 Snail family of transcription factors
V$SNAI Snail family of zinc finger transcription factors binding to E-box motifs V$SNAI2.01 Snail family transcriptional repressor 2
V$SNAI3.01 Snail family transcriptional repressor 3
V$STAF Selenocysteine tRNA activating factor V$THAP11.01 THAP domain containing 11 (Ronin)
V$ZADT Zinc finger, AD-type V$ZNF276.01 Zinc finger protein 276, CENPZ (centromere protein Z)
V$ZF07 C2H2 zinc finger transcription factors 7 V$ZNF444.01 Zinc finger protein 444, endothelial zinc finger protein 2, ZSCAN17
V$ZF18 C2H2 zinc finger transcription factors 18 V$ZNF750.01 Zinc finger protein 750
V$ZF19 C2H2 zinc finger transcription factors 19 V$ZNF345.01 Zinc finger protein 345 (HZF10)
V$ZF20 C2H2 zinc finger transcription factors 20 V$ZNF771.01 Zinc finger protein 771, mesenchymal stem cell protein DSC43
V$ZF21 C2H2 zinc finger transcription factors 21 V$ZNF660.01 Zinc finger protein 660
V$ZF22 C2H2 zinc finger transcription factors 22 V$ZNF704.01 Zinc finger protein 704
V$ZF23 C2H2 zinc finger transcription factors 23 V$ZSCAN23.01 Zinc finger and SCAN domain containing 23
V$ZF24 C2H2 zinc finger transcription factors 24 V$ZNF24.01 Zinc finger protein 24 (KOX17, ZNF191, ZFP24))
V$ZNF24.02 Zinc finger protein 24 (KOX17, ZNF191, ZFP24))
V$ZF25 C2H2 zinc finger transcription factors 25 V$ZSCAN9.01 Zinc finger and SCAN domain containing 9
V$ZF26 C2H2 zinc finger transcription factors 26 V$ZNF396.01 Zinc finger protein 396, ZSCAN14
V$ZF27 C2H2 zinc finger transcription factors 27 V$ZNF140.01 Zinc finger protein 140, pHZ-39
V$ZF41 C2H2 zinc finger transcription factors 41 V$ZFP41.01 ZFP41 zinc finger protein (ZNF753)
V$ZICF Members of ZIC-family, zinc finger protein of the cerebellum V$ZIC1.02 Zic family member 1, Zinc finger protein of the cerebellum 1
V$ZIC5.01 Zic family member 5

Plants

Family Family Information Matrix Name Matrix Information
P$GRSF Germline-restrictive silencing factor P$GRSF.01 Germline-restrictive silencing factor
P$MGSA Male gamete selective activation motifs P$MGSA.01 Male gamete selective activation motif
P$TODS Time-of-day-specific cis regulatory elements P$PRR5.01 Pseudo-response regulator 5
P$PRR7.01 Pseudo-response regulator 7
P$PRR9.01 Pseudo-response regulator 9
P$TOC1.01 Timing of CAB expression 1, CCT motif-containing response regulator protein (PRR1)