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[Matrices moved to other families]

[Matrices renamed]
[Matrices modified]
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[New weight matrices]
[Matrices moved to other families]

[Matrices renamed] [Matrices modified] [Matrices removed]

[Changes in previous release] [View all matrices]

[Matrices renamed] [Matrices modified] [Matrices removed]

[Changes in previous release] [View all matrices]

Matrix Family Library Version 6.3 (March 2007) contains
**737 weight matrices in 301 families** classified into the following
groups:

**Fungi**(47 matrices in 35 families)**Insects**(43 matrices in 30 families)**Plants**(142 matrices in 66 families)**Vertebrates**(482 matrices in 152 families)**Miscellaneous**(12 matrices in 11 families)**Other Functional Elements**(11 matrices in 7 families)

- Homo sapiens: 671
- Mus musculus: 655
- Rattus norvegicus: 555
- Pan troglodytes: 393
- Gallus gallus: 279
- Macaca mulatta: 221
- Danio rerio: 160
- Bos taurus: 113
- Canis familiaris: 65
- Monodelphis domestica: 1

Family | Family Information | Matrix Name | Matrix Information |
---|---|---|---|

V$HOMF | Homeodomain transcription factors | V$NOBOX.01 | Homeobox containing germ cell-specific transcription factor NOBOX |

V$NR2F | Nuclear receptor subfamily 2 factors | V$HNF4.03 | Hepatic nuclear factor 4, DR1 sites |

V$TR2_TR4.01 | DR1 binding sites for TR2 homodimers or TR2/TR4 heterodimers | ||

V$TR4.01 | TR4 homodimer, DR1 site | ||

V$P53F | p53 tumor suppressor | V$P53.04 | Tumor suppressor p53 |

V$P53.05 | Tumor suppressor p53 | ||

V$P53.06 | Tumor suppressor p53 | ||

V$PAX6 | PAX-4/PAX-6 paired domain binding sites | V$PAX6.03 | PAX6 paired domain binding site |

V$PAX6.04 | PAX6 paired domain binding site | ||

V$RORA | v-ERB and RAR-related orphan receptor alpha | V$REV-ERBA.01 | Orphan nuclear receptor rev-erb alpha (NR1D1) |

V$REV-ERBA.02 | Orphan nuclear receptor rev-erb alpha (NR1D1), homodimer DR2 binding site | ||

V$REV-ERBA.03 | Orphan nuclear receptor rev-erb alpha (NR1D1), homodimer DR2 binding site | ||

V$RORA.01 | RAR-related orphan receptor alpha | ||

V$RORGAMMA.01 | RAR-related orphan receptor gamma | ||

V$RXRF | RXR heterodimer binding sites | V$CAR_RXR.01 | Constitutive androstane receptor / retinoid X receptor heterodimer, DR4 sites |

V$PXR_RXR.01 | Pregnane X receptor / retinoid X receptor heterodimer, DR4 sites | ||

V$RAR_RXR.01 | Retinoic acid receptor / retinoid X receptor heterodimer, DR1 sites | ||

V$RAR_RXR.02 | Retinoic acid receptor / retinoid X receptor heterodimer, DR2 sites | ||

V$RAR_RXR.03 | Retinoic acid receptor / retinoid X receptor heterodimer, DR5 sites | ||

V$RXR_RXR.01 | Retinoid X receptor homodimer, DR1 sites | ||

V$THR.01 | THR/RXR heterodimer and THR homodimer DR4 binding sites |

Family | Family Information | Matrix Name | Matrix Information |
---|---|---|---|

P$CE1F | Coupling element 1 binding factors | P$SBOX.01 | Sugar and ABA responsive element conserved in several rbcS promoters |

P$IDRE | Iron-deficiency response elements | P$IDE1.01 | Iron-deficiency-responsive element 1 |

P$MYCL | Myc-like basic helix-loop-helix binding factors | P$OSIRO2.01 | Rice iron-related transcription factor 2 |

P$PREM | Motifs of plastid response elements | P$MGPROTORE.01 | Promoter elements involved in MgProto (Mg-protoporphyrin IX) and light-mediated induction |

P$SBPD | SBP-domain proteins | P$SBP.01 | SQUA promoter binding proteins |

P$SURE | Sugar response elements, SURE and SURE-like sequences in plant promoters | P$SURE.01 | Sugar responsive elements |

- V$FXRE.01 moved from V$RXRF to V$FXRE
- V$RTR.01 moved from V$RARF to V$GCNR
- V$NBRE.01 moved from V$RORA to V$NBRE
- V$TR2.01 moved from V$RORA to V$NR2F
- V$TR4.01 moved from V$RORA to V$NR2F

- V$T3R.01 renamed to V$VERBA.01

- V$PXRCAR.01
- V$RAR.01
- V$RAR.02

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