Overview of Help-Pages

Overview of Genomatix Help Pages

Genomatix Software Suite Introduction Release Notes NGS Mapping (only available on GGA) Genomatix Mapper Mapping Reads to the Genome Mapping Reads to the Small RNA Library Mapping of Bisulfite Sequencing Data Release Notes NGS Analysis (only available on GGA) Introduction Complete Workflow for ChIPSeq Analysis / Peak Finding NGSAnalyzer MACS/MACS2 SICER Evaluation with Control Data Expression Analysis for RNASeq Principal Component Analysis microRNA Analysis Small Variant Detection Structural Variant Detection Release Notes Genes & Genomes Available Genomes and Statistics Source of Elements Genome Annotation (ElDorado) Annotation & Analysis Detailed Transcript Info Tissue Profiles SNP Analysis Annotated Sequence Detailed Mapping Alternative Transcripts Comparative Genomics More Gene Info Literature Analysis Public Data in Genome Browser & GenomeInspector Genome Browser Gene2Promoter Large Scale Promoter Extraction Annotation and Statistics Search for orthologous regions Variant Analysis GenomeInspector Enhancer Filter Release Notes	Gene Regulation Introduction Supply of DNA Sequences DNA Sequence Formats Scores MatInspector Matrix Information MatInspector Algorithm Library Statistics Release Notes Common TF sites MatBase Content Statistics Content Release Notes GEMS Launcher Menu DiAlign TF FrameWorker ModelInspector Model Information Search for phylogenetically conserved promoter models Definition of Weight Matrices (MatDefine) Weight Matrix CoreSearch FastM SNPInspector SequenceShaper PromoterInspector SMARTest Primer Search DiAlign ExonMapper Overrepresented TFs Release Notes Literature & Pathways GePS (Pathway System) GeneRanker LitInspector LitInspector Background LitInspector Quality Gene-TF Analysis Release Notes
Genomatix Tools DNA Sequence Tools BED File Tools BED File Format File import from the GGA BAM File Tools BAM File Format VCF File Tools GeneID Tools List Comparison Release Notes	Projects & Account Job Queuing Projects & Results Personal Matrix Library & Subsets Personal Model Library & Subsets
Tutorials Short Application Examples Webinar Recordings	FAQs Frequently asked scientific questions Frequently asked technical questions

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